<DNA template>
The DNA template (circular DNA or linear DNA) for protein synthesis should be contained that a protein-coding sequence be under the control of a T7 promoter and located downstream of a ribosomal binding site (RBS) sequence. Additionally, T7 terminator sequence is located at downstream of the coding sequence. Distance between T7 promoter and start ATG should not exceed 100 base pairs, and also distance between the RBS sequence and start ATG should not be more than 5-8 base pairs. Please refer to Figure 1 for an example of the DNA template.

Figure 1. An example of template
In case of very low protein yield, optimization of nucleotide sequence (codon usage, addition of N-terminal tags, etc.) is required to improve protein productivity. We recommend the use of ProX tag, which is original N-terminal peptide tag developed for efficient expression in E.coli cell-free protein synthesis system. ProX tag sequence is indicated at Figure 2.
( A )
| 5’ ] |
AUG |
UCU |
AAA |
CAA |
AUC |
GAA |
GUA |
AAC |
UUU |
UCU |
AAU |
GAG |
] 3’ |
| |
Met |
Ser |
Lys |
Gln |
Ile |
Glu |
Val |
Asn |
Phe |
Ser |
Asn |
Glu |
|
( B )

Figure 2. (A) ProX tag sequence, and (B) an example of template
< mRNA template>
Messenger RNA, which is generally synthesized from circular or linear DNA template using commercial transcription kit or RNA polymerase, is also available for RYTS reaction. In such case, the DNA template for transcription of mRNA should be also constructed according to section 5.1 DNA template. But, the T7 promoter, which is recognized by T7 RNA polymerase, can be replaced to other promoter recognized by other RNA polymerase (e.g., SP6 promoter recognized by SP6 RNA polymerase).
<Reference>
1) Cell-free protein synthesis system from Escherichia coli cells cultured at decreased temperatures improves productivity by decreasing DNA template degradation. Eiko Seki, Natuko Matsuda, Shigeyuki Yokoyama and Takanori Kigawa. Analytical Biochemistry, 377, 156-161 (2008)
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